Hillsborough is one of two towns in the Hillsboro-Deering school district.
Grades 9-12: Hillsborough is home to the Hillsboro-Deering High School, which also serves the town of Deering.
Grades 6-8: Hillsborough-Deering Middle School in Hillsborough also serves both towns of Hillsborough and Deering.
Grades Pre-5: Hillsborough-Deering Elementary School is also in Hillsborough, and also serves the town of Deering.
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